Project titles for:
Project titles for: 2006-08
- Detection of putative miRNA sequences in rice genome
- QSAR Studies on Tuberculosis Inhibitors
- Eigenvalue analysis and its applications in Bioinformatics
- Parallel Implementation of DOCK Algorithm
- Comparative Analysis of Protein Classification Methods
- Identification of Neuraminidase inhibitors of Influenza virus
- Identification of Transcription factor binding sites in yeast
- Restriction site analysis of Rice genome
- Docking Studies on Tuberculosis Inhibitors
- Determination of sequence homology in promoter region for abiotic stress responsive genes in rice
- SNP mining in Chromosome no.8 of rice
- Annotation of EST Sequences present on Chromosome no. 1, 4 & 8 of Rice
- Function Prediction for genes near BAD-2 locus on Chromosome no. 8 of Rice
- Computational Prediction of Putative miRNA Candidates in Malarial Parasite Genome
- Multimedia database of fungal diseases in Rice and Wheat
- GePre: A Gene Prediction Tool
- SEALI: A Sequence Alignment Tool
- Tannase Structure Prediction
- Algorithms on PAM and BLOSUM Matrices
In the present study, two datasets of 500 and 1000 molecule obtained from NCI were docked to HIV-1RT molecules. In addition 1000 copies of known HIV inhibitor nevirapine were also prepared and docked using the parallel version of Dock6.2 on different number of cpu’s. Each dataset was supplied to 1,2,4,6,8,10,12,14 and 16 cpu’s on a 8 node Rocks cluster and the speedup and performance of dock was monitored for each dataset. The docking shows a considerable speedup as the processing unit were increased. Better results were obtained at 10 and 16 cpu’s and with larger datasets. Also a good performance was observed when 1000 copy dataset of the ligand nevrapine was used.